Collaboration Phenotypes

Contact authors listed below are open to engaging others in the development of their phenotypes. Unless the status of the phenotype is marked as final, these phenotypes cannot be viewed in-depth until the author has shared access with you and you have logged into PheKB. Click on an author's name to send an email to him or her expressing your interest in collaborating.

Title Institution Data Modalities and Methods Used Description Status Contact Author Type of Phenotype
Asparaginase-induced acute pancreatitis Vanderbilt University Medical Center This algorithm selects patients in the Synthetic Derivative, Vanderbilt's de-identified electronic health record database, who have had pegaspargase-induced or L-asparaginase-induced acute pancreatitis. In development Lincoln Shade Disease or Syndrome, Drug Response - adverse effect or efficacy
Aspirin-Exacerbated Respiratory Disease Brigham and Women's Hospital CPT Codes, ICD 10 Codes, ICD 9 Codes, Medications BACKGROUND: Aspirin-exacerbated respiratory disease (AERD) is characterized by 3 clinical features: asthma, nasal polyposis, and respiratory reactions to cyclooxygenase-1 inhibitors (nonsteroidal anti-inflammatory drugs). Electronic health records (EHRs) contain information on each feature of this triad. In development Katherine Cahill Disease or Syndrome
Bactrim-induced Stevens-Johnson syndrome/toxic epidermal necrolysis (BI-SJS/TEN) Vanderbilt University Medical Center CPT Codes, ICD 10 Codes, ICD 9 Codes, Medications, Natural Language Processing This algorithm selects patients in the Synthetic Derivative, Vanderbilt's de-identified electronic health record database, who have had Bactrim-induced Stevens-Johnson syndrome/toxic epidermal necrolysis. In development Lincoln Shade Disease or Syndrome, Drug Response - adverse effect or efficacy
Benign Prostatic Hyperplasia (BPH) Vanderbilt University Medical Center CPT Codes, ICD 9 Codes, Laboratories, Medications, Natural Language Processing Validated Sarah Stallings Disease or Syndrome
Chronic Kidney Disease Columbia University CPT Codes, ICD 9 Codes, Laboratories Chronic kidney disease (CKD) is defined as an abnormality of kidney structure or function present for longer than 3 months. CKD can occur as a result of heterogeneous disorders affecting the kidney. In the United States, an estimated 13.6% of adults have CKD. Notably, adjusted mortality rates are higher for patients with CKD than those without, and rates increase with CKD stage. In development Ning Sunny Shang Disease or Syndrome
Chronic pain cohort ICD 9 Codes, Medications Primary care patients who have a diagnostic indication of chronic non-malignant pain for which they are on long-term opioid therapy Validated Reesa Laws Disease or Syndrome
Colorectal Cancer (CRC) Group Health/UW CPT Codes, ICD 9 Codes, Laboratories, Medications, Natural Language Processing, Vital Signs A pheontype defining patients with strong evidence of having been diagnosed with colorectal cancer (cases) and patients who clearly do not have such diagnoses (controls).  This phenotype is being used for sequencing studies. The only NLP involved in this phenotype is a very simple string search applied to pathology reports. Validated David Carrell Disease or Syndrome
Consistent Care Harvard University CPT Codes, ICD 10 Codes, ICD 9 Codes Final Elizabeth Wood Karlson Other Trait
Electronic Health Record-based Phenotyping Algorithm for Familial Hypercholesterolemia Mayo Clinic CPT Codes, ICD 9 Codes, Laboratories, Medications, Natural Language Processing Familial hypercholesterolemia (FH) is a relatively common Mendelian genetic disorder that is associated with elevated plasma low-density lipoprotein cholesterol (LDL-C) levels and dramatically increased lifetime risk for premature atherosclerotic cardiovascular disease (ASCVD). Final Maya Safarova Disease or Syndrome
Heparin-induced thrombocytopenia (HIT) Vanderbilt University ICD 9 Codes, Laboratories, Medications, Natural Language Processing In development Jason Hansen Karnes Disease or Syndrome, Drug Response - adverse effect or efficacy
Major Adverse Cardiac Events while on Clopidogrel Vanderbilt University CPT Codes, ICD 9 Codes, Medications Patients with Major Adverse Cardiac Events (MACE) while on Clopidogrel. A MACE event can be either a revascularization event (bypass surgery or angioplasty/intracardiac stenting) or an acute myocardial infarction (AMI). A revascularization event is defined by the presence of a bypass, an angioplasty or a stent CPT code. An AMI event has been illustrated in our previous algorithm. Testing Wei-Qi Wei Drug Response - adverse effect or efficacy
Peanut Allergy Vanderbilt University, Vanderbilt University Medical Center CPT Codes, Laboratories Food allergy is defined as an immune response that occurs reproducibly to a given food, typically an immunoglobulin E (IgE)-mediated clinical reaction to specific protein epitopes.  Over the last 20-30 years, food allergy has grown into a major public health problem. Final Jonathan Hemler Disease or Syndrome
Pediatric Lipid Distribution for Development of Pediatric Familial Hypercholesterolemia Geisinger Health System ICD 10 Codes, ICD 9 Codes, Laboratories, Medications Primary aims of the peds FH phenotyping are: In development Ken Borthwick Other Trait
Post-operative Complications from Major General Surgeries Algorithm Vanderbilt CPT Codes, ICD 9 Codes Post-operative Complications as defined by the American College of Surgeon's National Surgical Quality Improvement Program (NSQIP) are a set of 21 clinical conditions that occur 30 days from the date of operation. Testing Tom Mou Disease or Syndrome
Sickle Cell Disease Medical College of Wisconsin ICD 9 Codes Final Daniel Michalik Disease or Syndrome

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