Gastroesophageal Reflux Disease (GERD) Phenotype Algorithm

Primary tabs

Structured data: 
CPT
ICD9
Data Source/clinical domain: 
observations
medications
Files: 
GERD phenotype algorithm.docx
GERD chart review form.docx
GERD Data Dictionary.xlsx
People Watching For Updates:
Jacqueline Kirby
Jen Pacheco
Jyoti Pathak
Jane Grafton
John Connolly
Frank Mentch
Lyam Vazquez
David Cronkite
Kathryn Jackson
Vivian Gainer
Barbara Benoit
Information
Phenotype ID: 
224
Date Created: 
Wednesday, August 20, 2014
Status: 
Final
Do Not List on the Collaboration Phenotypes List
Contact information
Contact Author: 
Lyam Vazquez
Authors: 
CHOP Phenotyping group
Institution: 
CHOP
Network Associations: 
eMERGE
View Phenotyping Groups: 
eMERGE CHOP Group
eMERGE Phenotype WG
Owner Phenotyping Groups: 
eMERGE CHOP Group
Demographics
Gender: 
Female
Male
Age: 
Pediatric
Adult
Geriatric
Race: 
Black (African American, West African, Ethiopian, etc.)
Caucasian (European)
Caucasian (North African, Middle East, Other)
East Asian (Mongol, Tibetan, Korean, Japanese, Thai, etc.)
Mixed Race
Native American
Other Race
Pacific Islander (Polynesian, Micronesian, Hawaiian, etc.)
 

Suggested Citation

CHOP Phenotyping group. CHOP. Gastroesophageal Reflux Disease (GERD) Phenotype Algorithm. PheKB; 2014 Available from: https://phekb.org/phenotype/224

Comments

Hello,

Would it be possible to get definiton of which CPTs are procedures and which CPTs are surgeries?  The CPT tab does not distinguish between the two, yet the types need to be sent in separate files.

Thanks!

-Katie

Thanks Katie - good point. Realistically, there is no real need to require separate files - fine to send them combined.

Cheers,

John  (CHOP)

I'm unclear about a couple of the hx_of_gerd_meds table:

1. drug_name: Is this the generic name of the drug?

2. drug_code: Is this the RxCui value? NDC?

 

I also noticed that in the hx_of_gerd table, there's a ADHD_ICD9 variable. Was this intended to be GERD_ICD9?

 

Thanks,
David

For the drug_name we prefer the generic name (as suggested in the comment) and for drug_code, the rxcui of the generic if available.

The ADHD_ICD9 variable is a typo that we corrected, but it looks like a version without the correction snuck into PheKB. Please ignore.

Thanks,

John